SAMtools is a powerful toolkit for processing, analyzing, and managing sequencing data. Trusted worldwide, it ensures efficient workflows, accurate results, and compatibility in bioinformatics …

Samtools Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories: Samtools Reading/writing/editing/indexing/viewing …

Samtools split: support splitting files based on the contents of auxiliary tags. Also adds a -M option to limit the number of files split can make, to avoid accidental resource over-allocation, and …

SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM (Sequence Alignment/Map), BAM (Binary Alignment/Map) and CRAM …

Dec 16, 2025 · Download SAM tools for free. SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities …

Samtools organisation for next-generation sequencing developers: htslib C API, htsjdk Java API, file format specifications, and samtools/bcftools source code.

Dec 10, 2024 · Using Multi-Threads for Samtools # Samtools supports multi-threading to speed up operations like sorting, indexing, and depth calculation. Below are examples of common …

Apr 27, 2025 · Samtools is a versatile toolkit for manipulating and analyzing sequence alignment data. Its modular architecture allows for a wide range of operations on SAM, BAM, and CRAM …

New releases are announced on the samtools mailing lists and by @htslib on Twitter. Previous releases are available from the samtools GitHub organisation (see samtools, bcftools, or htslib …

Tools (written in C using htslib) for manipulating next-generation sequencing data - samtools/samtools