FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses …

FastQC aims to provide a QC report which can spot problems which originate either in the sequencer or in the starting library material. FastQC can be run in one of two modes.

Nov 13, 2017 · FastQC A quality control application for high throughput sequence data README Installation and setup instructions Release Notes Please read these before using the program. …

If you want to run FastQC as part of a sequencing pipeline you may wish to change the formatting of the report to add in your own branding or to include extra information.

FastQC attempts to automatically determine which encoding method was used, but in some very limited datasets it is possible that it will guess this incorrectly (ironically only when your data is …

FastQC is a cross-platform application, written in java. In theory it should run on any platform which has a suitable java runtime environment. Having said that we've only tested in on …

Summary Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the …

Summary Basic Statistics Per base sequence quality Per tile sequence quality Per sequence quality scores Per base sequence content Per sequence GC content Per base N ...

Summary In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level …