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  1. What are the types of bond orders? - Matter Modeling Stack …

    Laplacian Bond Order This method is an extension of the QTAIM (Quantum Theory of Atoms In Molecules) concept of using the Laplacian of the electron density $\nabla^2\rho$ to …

  2. How may I calculate the bond length between two atoms?

    Apr 26, 2021 · Bond formation could be something like 1-P $_ {break}$. You could also run quantum calculations for all possible pairs (or higher order clusters) of atoms or hit the …

  3. Lost atoms in LAMMPS - Matter Modeling Stack Exchange

    Nov 1, 2022 · HI @Magic_Number, after running with more recorded timestep, I think the main reason is because the molecule pass through zlo and have atom deleted, as result, the bond …

  4. Scanning two bond lengths G-16 - Matter Modeling Stack Exchange

    May 9, 2023 · When you are scanning two bond lengths in Gaussian, you step once through the first bond scan, and complete stepping through the second bond scan. For example, consider …

  5. Maximum bond length in Vesta - Matter Modeling Stack Exchange

    Dec 30, 2022 · I need some cutoff radii to count bonds between different atoms in my system. When a .cif file is opened in Vesta, there are some default values of min and max bond …

  6. What is the method to examine atomic bonds and hydrogen …

    May 1, 2025 · Bond path can be straight line or curve, obviously for the latter case the length of bond path is longer than the sum of the distances between BCP and associated two (3,-3) …

  7. How to choose sigma and epsilon value for carbon to calculate …

    May 12, 2022 · How to choose sigma and epsilon value for carbon to calculate the bond coeff (lj units) in LAMMPS? Ask Question Asked 3 years, 5 months ago Modified 3 years, 5 months ago

  8. Is it possible to do a Gaussian redundant scan with some fixed …

    Jun 18, 2021 · The last line indicates that the bond (B) between atoms 5 and 6 are scanned (S) with 20 steps of size -0.1 Angstrom. In the image you posted in the question, the bond …

  9. density functional theory - How to calculate homolytic bond ...

    May 25, 2020 · An experimental colleague asked me how hard it would be to calculate homolytic bond-dissociation energies for different phosphonates which are involved in a …

  10. proteins - From a PDB file, how may I know which atoms have …

    Sep 29, 2023 · A bond is present when the distance between two atoms is lower than the sum of the Van der Waals radii of the two atoms. Van der Waals radii are typically looked up from a …